Top hotels in San Juan Island
Find the perfect hotel for your stay in San Juan Island
Hotels in popular cities in San Juan Island
Below are the most popular cities in San Juan Island to stay in, as well as some of the best hotels in each area
Friday Harbor
Search hotels in Friday HarborRoche Harbor
Search hotels in Roche HarborCharming Cottage Near Roche Harbor! (Bsb)
Roche Harbor, WA, United States
Waterfront With Dock! Near Roche Harbor! (Kwp)
Roche Harbor, WA, United States
Pet Friendly Lovely Home on the North End! (NBH)
Roche Harbor, WA, United States
Waterfront Cabin near Roche Harbor! (Elephant House)
Roche Harbor, WA, United States
How much does a hotel in San Juan Island cost per night?
Use the information below to find quality San Juan Island hotel rooms for low prices
2 stars and under
3 stars
4 stars +
Juniper Lane Guest House
1312 Beaverton Valley Road, Friday Harbor, WA, United States
Tucker House Inn & Harrison House Suites
275 C Street, Friday Harbor, WA, United States
Best prices found by momondo users in the past 24 hours.
Hostels and cheap hotels in San Juan Island
These hotels and hostels usually make for a cheap way to stay in San Juan Island
Downtown Friday Harbor! Adults Only (Ccs# 3)
Friday Harbor, WA, United States
Downtown Friday Harbor! Adults Only (Ccs#1)
Friday Harbor, WA, United States
Downtown Friday Harbor! (Miner's)
Friday Harbor, WA, United States
Peter Jensen House
475 Argyle Avenue, Friday Harbor, WA, United States
San Juan Suites- Channel Room! Downtown!
Friday Harbor, WA, United States
Downtown Friday Harbor! Adults Only (Ccs#2)
Friday Harbor, WA, United States
Downtown Friday Harbor! (Artist's Suite)
Friday Harbor, WA, United States
Spacious Studio Downtown! (Explorer's Suite)
Friday Harbor, WA, United States
Jones Cabin
475 Argyle Avenue, Friday Harbor, WA, United States
Downtown Suite! (Farmer's Suite)
Friday Harbor, WA, United States
Downtown Friday Harbor! (Logger Suite)
Friday Harbor, WA, United States
Downtown Friday Harbor! Adults Only (Ccs#4)
Friday Harbor, WA, United States
Saturn's Return
2687 West Valley Road, Friday Harbor, WA, United States
In Town! Cannery Inn-Salish
Friday Harbor, WA, United States
Waterview In Town! Cannery Inn - Hyak
Friday Harbor, WA, United States
Trumpeter Inn
318 Trumpeter Way, Friday Harbor, WA, United States
Get the best value hotel in San Juan Island
These San Juan Island hotels have the best prices for their ratings
Juniper Lane Guest House
1312 Beaverton Valley Road, Friday Harbor, WA, United States
Golf Course Guesthouse , Friday Harbor, San Juan Isl.
235 Fairway Dr, Friday Harbor, WA, United States
The Web Suites
Friday Harbor, WA, United States
Charming Cottage Overlooking Beautiful Pond
Friday Harbor, WA, United States
San Juan Island, Yakima Suite #1901
Friday Harbor, WA, United States
Trumpeter Inn
318 Trumpeter Way, Friday Harbor, WA, United States
Saturn's Return
2687 West Valley Road, Friday Harbor, WA, United States
Treehouse Suite - Downtown - Walking Distance to Ferry, Stores, Restaurants!
Friday Harbor, WA, United States
Wayfarer's Rest
Friday Harbor, WA, United States
Information about staying in San Juan Island
Read these important travel tips before booking a hotel in San Juan Island
What are the best hotels in San Juan Island?
Judging by user ratings, the best hotels in San Juan Island are: Perfect location to relax, unwind, rejuvinate, explore and enjoy San Juan Island in Friday Harbor (rated 10.0), and The Web Suites in Friday Harbor (rated 9.7)Juniper Lane Guest House in Friday Harbor (rated 9.7)
What is the most popular hotel in San Juan Island?
Out of all our users looking for a hotel in San Juan Island in the past 12 months, 25% booked a room at The Orca Inn, making it the most popular hotel in San Juan Island. 952 of our users gave The Orca Inn a rating of 7.6 out of 10.
How much does a hotel in San Juan Island cost in June?
In June, you can expect the cost of a double room in a hotel in San Juan Island to be around $149 per night. However, some users found double rooms in San Juan Island during the month of June for as low as $79 per night in Friday Harbor.
How many operators does momondo search for hotels in San Juan Island?
As of June 2025, there are 222 operators available to choose from for hotels in San Juan Island.
When did momondo last update prices for hotels in San Juan Island?
Prices for hotels in San Juan Island were last updated today.
Why use momondo?
Why should I book accomodation in San Juan Island through momondo?
Booking accommodation or a hotels in San Juan Island is made easy with momondo. We are free to use and there are no hidden costs or fees. momondo compares hundreds of websites and gives you all your San Juan Island hotels and accommodation options in one place.
How does momondo help me find a great place to stay in San Juan Island?
momondo finds you a great place to stay in San Juan Island by enabling you to filter and refine your search. You can filter by price, location, amenities, review score and so much more.